PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12849_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 296aa    MW: 32740.6 Da    PI: 8.007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12849_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1757106255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  RrC12849_p1  57 RYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEEAACAYDCAARAMRG 106
                  59*******.**********84....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-3357120IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2157114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-2957113IPR001471AP2/ERF domain
CDDcd000187.66E-3157113No hitNo description
PROSITE profilePS5103221.95757114IPR001471AP2/ERF domain
PfamPF008476.5E-1157106IPR001471AP2/ERF domain
PRINTSPR003671.4E-95869IPR001471AP2/ERF domain
PRINTSPR003671.4E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEEAIMRLEG AEHRETNNHS LKRKPSRTSS TAPGSPGGVT IAKAAPGGGA SGGTSIRYRG  60
VRRRPWGRYA AEIRDPMSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPIPSL  120
DSFHHRLFSP PPMNMFLLRD VLNSQPLSPF AYPHCNISNV SGFVNEPFTN VNDVSEDRSP  180
KAKRSSTIDN DNMVSILQPE PTGSGLLQEV VQGFLPKPIS QQTSTPPKTN QPIVLENGFQ  240
TDLGLPDHVN VEGNGFNQVK YHGELGWTDH VSGFDSAKMY QNGNAGMFYQ YCFHDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1858113359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657022.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
RefseqXP_013655137.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
RefseqXP_009109850.10.0PREDICTED: ethylene-responsive transcription factor ESR2 isoform X1
SwissprotQ9FYK51e-171ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLA0A078HEC60.0A0A078HEC6_BRANA; BnaA08g19170D protein
STRINGBra010972.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-144DORNROSCHEN-like